YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28827148, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVNSSPASY ILNATETPSH NKPKACEQLN IATEVFLILG IVSLLENILV ICAIVKNKNL  60
   61 HSPMYFFVCS LAVADMLVSV SNAWETIVIY LLTNRQLVVE DHFIRQMDNV FDSMICISVV 120
  121 ASMCSLLAIA VDRYVTIFYA LRYHNIMTVR RAALIIGGIW TFCTGCGIVF IIYSDNTSVI 180
  181 VCLVSMFFIM LALMASLYSH MFMLARSHVK RIAALPGYNS IHQRASMKAA VTLTILLGIF 240
  241 IVCWAPFFLH LILMISCPRN LYCMCFMSHF NMYLILIMCN SVIDPLIYAF RSQEMRKTLK 300
  301 EIICCYSLRN VFGMSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.69
Transmembrane Helix	35	55	0.72
Cytoplasmic	56	63	0.82
Transmembrane Helix	64	84	0.86
Non-Cytoplasmic	85	110	0.90
Transmembrane Helix	111	131	0.90
Cytoplasmic	132	151	0.83
Transmembrane Helix	152	173	0.95
Non-Cytoplasmic	174	179	0.82
Transmembrane Helix	180	202	0.92
Cytoplasmic	203	229	0.93
Transmembrane Helix	230	253	0.89
Non-Cytoplasmic	254	268	0.89
Transmembrane Helix	269	290	0.90
Cytoplasmic	291	316	0.97