YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27545281, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVGMRRCS LLTMAFTSVL LFICSIYSCY AQVPLLMWTS DGSSMPHLAE AAAGHTVSGG  60
   61 QLVSYLRSAL STAPHNVLLF LQDQLSIEDF TMYGGVFGNK QDSAFLNIES ALQMSSSPLV 120
  121 LSALDWTASH SVLDLFQKEL SVSAVHIDTN TPDEMKLNNT QPSLLAVRLP YTAGSQSKEM 180
  181 LLKNDMIIGE VLDMFKSQDM PYTAVYTGLK PSRTIEDAPV MAGFSMGRSL LQTPPPQSEK 240
  241 PPLVFNDTAG QPCIMLWADT LLAAYDGNQA DLASNIFNST PDTTGSFCNE TVSRLVLNYR 300
  301 NILNLQSLQL IFSMSKIFFP VSARNWTVMD QVVLEYDGQR AMFNASAGIN TPAEYSFRCQ 360
  361 NVSSAQSPLL VPRNATDNAT KWTLIFTDFQ IQSFSVTGDS FAFASDCAGF FSAGIWMGLV 420
  421 ISLLMLLILT YGLHMIMQLR TMDRFDDPKG PAISVPLSE

Type	Start	End	Confidence
Signal Peptide	1	31	0.85
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	412	0.94
Transmembrane Helix	413	434	0.93
Cytoplasmic	435	459	0.95