YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182889488, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYYNRELVV FFIKYKLSQR NYPCNHIGLT EDTNRTDGAE ENGEGAAGAT TLVNGTMNRT  60
   61 NASSTGTPPQ SPASSPQRQT NGSGGLDAVK EALRDSANEF ELRYSRAFND LSSQLHITPA 120
  121 TAYQSFESVM DEVFRDGVNW GRIVGLFAFG GALCVECVEK EMSPLVGRIA EWMTVYLDNH 180
  181 IQPWIQSQGG WERFAEIFGK DAAAESRKSQ ESFKKWLFAG MTLLTGVVVG GLIAQKRL

Type	Start	End	Confidence
Cytoplasmic	1	215	0.53
Transmembrane Helix	216	234	0.95
Non-Cytoplasmic	235	238	0.48