YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858441, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAGVQIVC VALGILGLIA TVVTIAIPQW KTSAFIGQNI ITAQVSEEGL WMQCVVQSTG  60
   61 QQQCKSYDSL LILSSDLQAA RAMTIISCML SVLSLLILCG GADFTTCIEN EDVKPKVTLV 120
  121 SAIGLILAGL LVIIPVSWAA NNVVRDFNNP MVPEAQKREL GPCIYIGWAS GVLLILAGGL 180
  181 LCCFSRPRSS GSSGAAKYYS NSASAPSKNY V

Type	Start	End	Confidence
Cytoplasmic	1	7	0.84
Transmembrane Helix	8	28	0.94
Non-Cytoplasmic	29	79	0.92
Transmembrane Helix	80	102	0.89
Cytoplasmic	103	116	0.81
Transmembrane Helix	117	140	0.90
Non-Cytoplasmic	141	163	0.88
Transmembrane Helix	164	184	0.95
Cytoplasmic	185	211	0.92