YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12053845, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIRFCCSLL PFSARRRDCR IPLKKFRTLR RTLSDSGRSL EELVSSSNSL KYNLGFPASN  60
   61 DPTPETLKNY LDAQYYGEIG LGTPVQTFTV VFDTGSSNLW VPSVHCSLTD IACLLHHKYN 120
  121 GGKSSTYVKN GTQFAIQYGS GSLSGYLSQD TCTIGDIAVE KQIFGEAIKQ PGVAFIAAKF 180
  181 DGILGMAYPR ISVDGVPPVF DMMMSQKKVE KNVFSFYLNR NPDTQPGGEL LLGGTDPKYY 240
  241 TGDFNYVDIS RQAYWQIHMD GMSIGSGLSL CKGGCEAIVD TGTSTSLITG PAAEVKALQK 300
  301 AIGAIPLMQG EYMVDCKKVP TLPTISFSLG GKVYSLTGEQ YILKESQGGH DICLSGFMGL 360
  361 DIPPPAGPLW ILGDVFIGQY YTVFDRENNR VGFAKAKSV

Type	Start	End	Confidence
Signal Peptide	1	16	0.74
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	399	0.99