YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33989451, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	230	0.99
Transmembrane Helix	231	253	0.94
Cytoplasmic	254	264	0.91
Transmembrane Helix	265	286	0.93
Non-Cytoplasmic	287	320	0.93
Transmembrane Helix	321	341	0.86
Cytoplasmic	342	355	0.81
Transmembrane Helix	356	378	0.86
Non-Cytoplasmic	379	400	0.93
Transmembrane Helix	401	424	0.90
Cytoplasmic	425	444	0.90
Transmembrane Helix	445	466	0.93
Non-Cytoplasmic	467	505	0.94
Transmembrane Helix	506	526	0.95
Cytoplasmic	527	550	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQASGSVCVF LALLLPCCFV ASGQHQGDNG IAVPDHGFCQ PITIPLCTDI AYNQTIMPNL  60
   61 VGHYNQEDAG LEVHQFYPLV KVQCSPELKF FLCSMYAPVC TVLEKAIPPC RSICERAKQG 120
  121 CEVLMNKFGF QWPEALRCEH FPVLGDGHIC VGQNDSMATV SPVHMPIPGT PSVQLYSTPD 180
  181 KPFRCPSTLK VPAYLSYKFL GEPDCGAPCE SSRTHRAYMF FTDQEIEFAR IWILIWSSLC 240
  241 CASTLFTVTT YIVDMQRFKY PERPIIFLSG CYTMVSIAYI AGYFLGDKVV CNESFFPDSY 300
  301 KTIVQGTKKE GCTILFMMLY FFSMASSIWW VILSLTWFLA AGMKWGHEAI EANSQYFHLA 360
  361 AWAVPAVKTI SILAMGQIDG DVLSGVCFVG LNNSDALRGF ILAPLFLYLF IGTSFLLAGF 420
  421 VSLFRIRTIM KHDGTKTEKL ERLMVRIGVF SVLYTVPATI VIACFFYEQA FRQQWEKSWI 480
  481 SMNCKSLAIP CPMQPAPHMT PDFTVFMIKY LMTLIVGITS GFWIWSGKTL HSWQKFYVRL 540
  541 TSAGQGETTV