YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123232880, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDDKNGWK EFFWNPRTRE FCGRTASSWG LILLFYLAFY IFLAGLFTLT MYVMLQTLDD  60
   61 HRPTYQDRLS TPGMMIRPKG EQLEIAYTTE YTETWERYVQ ALNNFLSPYN DTVQTQKNYE 120
  121 CKPDQFFIQE DSGGLKNFPK RSCQFKRSIL EKCSGITDRF YGYDEGKPCI IIKLNRVIGL 180
  181 LPAKDGQPPY VTCGAKKYKV GKDEWTDDSD KLGELAYYPP NGTFNLMYYP YYGKKAQVNY 240
  241 SQPLVAVKFL NITRNEDVNV ECKINSNNIP EGSERDKFAG RVSFTLRINS RD

Type	Start	End	Confidence
Cytoplasmic	1	28	0.84
Transmembrane Helix	29	54	0.82
Non-Cytoplasmic	55	292	0.91