YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHCR7_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMASDRVRKR HKGSANGAQT VEKEPSKEPA QWGRAWEVDW FSLSGVILLL CFAPFLVSFF  60
   61 IMACDQYQCS ISHPLLDLYN GDATLFTIWN RAPSFTWAAA KIYAIWVTFQ VVLYMCVPDF 120
  121 LHKILPGYVG GVQDGARTPA GLINKYEVNG LQCWLITHVL WVLNAQHFHW FSPTIIIDNW 180
  181 IPLLWCTNIL GYAVSTFAFI KAYLFPTNPE DCKFTGNMFY NYMMGIEFNP RIGKWFDFKL 240
  241 FFNGRPGIVA WTLINLSYAA KQQELYGYVT NSMILVNVLQ AVYVVDFFWN EAWYLKTIDI 300
  301 CHDHFGWYLG WGDCVWLPFL YTLQGLYLVY NPIQLSTPHA AGVLILGLVG YYIFRVTNHQ 360
  361 KDLFRRTEGN CSIWGKKPTF IECSYQSADG AIHKSKLMTS GFWGVARHMN YTGDLMGSLA 420
  421 YCLACGGNHL LPYFYIIYMT ILLVHRCIRD EHRCSNKYGK DWERYTAAVS YRLLPNIF

Type	Start	End	Confidence
Cytoplasmic	1	39	0.79
Transmembrane Helix	40	63	0.90
Non-Cytoplasmic	64	96	0.70
Transmembrane Helix	97	117	0.80
Cytoplasmic	118	149	0.68
Transmembrane Helix	150	170	0.59
Non-Cytoplasmic	171	180	0.61
Transmembrane Helix	181	200	0.84
Cytoplasmic	201	240	0.76
Transmembrane Helix	241	260	0.64
Non-Cytoplasmic	261	266	0.60
Transmembrane Helix	267	289	0.73
Cytoplasmic	290	304	0.70
Transmembrane Helix	305	328	0.75
Non-Cytoplasmic	329	334	0.79
Transmembrane Helix	335	356	0.89
Cytoplasmic	357	478	0.62