YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27461259, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLQKLLLL LLLAFPATLM LKGPVVSAQD ATEEEEAVDE DAGDDVLAED EDDEAEVEDD  60
   61 ENTELTEEKE EEEEEALVGE VKASPNADTT ILFVKGEDFP ANNIVKFLLG FSNKGSENFV 120
  121 VESLDASFRY PQDFQFYIQN FTALQLGTLV PPQRQATFEY SFIPAEPMGG RPFGLVINLN 180
  181 YRDDSGNVFQ DAVFNQTVTI TEREDGLDGE TIFMYVFLSG LGLLLVIGLH QLLESRKRRR 240
  241 PAAKVEMGTS NHNDVDMSWI PQETLNQINK ASPRRSPRKR TQKRSAGSDE

Type	Start	End	Confidence
Signal Peptide	1	28	0.99
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	211	0.99
Transmembrane Helix	212	233	0.91
Cytoplasmic	234	290	0.97