YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25815181, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLTVIGLFT LFTSIFATTP AREFVSLAER EDALLRDLFQ GYQRWVRPIL HANHTVKVRF  60
   61 GLKISQLVDV DEKNQLMTTN VWLYEEWLDY KLRWNPENYG GITFIRVPSE SIWLPDIVLY 120
  121 ENADGRFEGS IMTKAIVRYN GLITWTPPAS YKSACTMDVT FFPFDRQNCS MKFGSWTYDG 180
  181 NMVELVLVNH QVDRSDFFDN GEWEILSATG HKGSRRDGHY SYPYITYSFI LKRLPLFYTL 240
  241 FLIIPCLGLS FLTVLVFYLP SDEGEKVSLS TSVLVSLTVF LLVIEEIIPS SSKVIPLIGE 300
  301 YLLFIMIFVT LSIIVTVFVI NVHHRSSATY HPMSPWVRTL FLQRLPDLLC MRGNTDRYHY 360
  361 PQMEPQSPDL KPRSKKGPPG PEGDGQALIN MLEQATNSVR YISRHIKKEH FIREVVQDWK 420
  421 FVAQVLDRIF LWAFLTVSVL GTILIFTPAV KMFLSTPPPP SP

Type	Start	End	Confidence
Signal Peptide	1	21	0.90
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	236	0.98
Transmembrane Helix	237	259	0.94
Cytoplasmic	260	266	0.93
Transmembrane Helix	267	288	0.90
Non-Cytoplasmic	289	300	0.81
Transmembrane Helix	301	322	0.93
Cytoplasmic	323	428	0.98
Transmembrane Helix	429	450	0.94
Non-Cytoplasmic	451	462	0.90