YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41054962, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIWEYTLYF TTTCCLWSVS LQGEHQRRLY RDLMKDYNPL ERPVFNDTHS LTVYFSMSLM  60
   61 QIMDVDEKNQ VLTTNIWLQL YWYDYYLQWN ASEYPGVTNV RFPDSQIWKP DILLYNSADE 120
  121 RFDATFHTNV LVNSSGACQY LPPGIFKSTC YIDVRWFPFD LQRCDLKFGS WTYGGWSLDL 180
  181 QMIDADITGY IANGEWDLVE VPGRRNERFY DCCKEPYPDV TFTVVMRRRT LYYGLNLLIP 240
  241 CVLISTLALL VFLLPADSGE KISLGITVLL SLTVFMLLVA EIMPATSDSV PLIAQYFATT 300
  301 MVIVGLSVIA TVWVLQYHYH DPEGGKMPKW TRVVLLNWCA WFLRMKRPGE DKVRPACHNK 360
  361 QPRSSLSSVD LNISPGVAQS TNGNLLYIGF RGMDTIHYAT SPDSGVICSR LVATGEEDVL 420
  421 LPGAQASSVS SSGPGETELS KILDEVRYIS KRFRDQDEED TVCNEWKFAA SVIDRLCLMA 480
  481 FSLFTILCTI GILMSAPNFV EAISKDFFT

Type	Start	End	Confidence
Cytoplasmic	1	231	0.65
Transmembrane Helix	232	254	0.93
Non-Cytoplasmic	255	261	0.56
Transmembrane Helix	262	283	0.91
Cytoplasmic	284	292	0.56
Transmembrane Helix	293	315	0.90
Non-Cytoplasmic	316	327	0.56
Transmembrane Helix	328	345	0.58
Cytoplasmic	346	475	0.96
Transmembrane Helix	476	497	0.91
Non-Cytoplasmic	498	509	0.88