YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41054924, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEIRIKTLL NNLWMLILIA DHVQPVLSDG WIHAHAEDKL FHKLFIGYNK WSRPVRNISD  60
   61 VVIVKFGLSI AQLIDVDEKN QMMTTNVWLK QEWNDYKLRW NPSEFDNVTS IRVPSEMIWV 120
  121 PDIVLYNNAD GEFAVTHMTK AHLFHTGKVS WVPPAIYKSS CSIDVTFFPF DQQNCKMKFG 180
  181 SWTYDKAKID LEQIEGTVDL KDYWESGEWA IINAVGTYNT KKYDCCHEIY PDITYFFIIR 240
  241 RLPLSYTINL IIPCLLISCL TVLVFYLPSD CGEKITLCIS VLLSLTVFLL LITEIIPSTS 300
  301 LVIPLIGEYL LFTMIFVTLS IVITVFVLNV HHRSPSTHSM PRWVHSVFLD HIPRWLFMRR 360
  361 PEPEKKPKKT ANLSTSKSWF QQETGVDGLV CQDMEFGIGL STSISSPSAT SLHLSDSEPL 420
  421 LQKYELQNLG HVVNLCQHPA KLGNLVSEPA LLFSPCVLRA LEGVRYIADH LKAEDEDFSV 480
  481 KEDWKYVAMV IDRIFLWMFI IVCLLGTIGL FLPPWLSGMI

Type	Start	End	Confidence
Signal Peptide	1	28	0.56
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	245	0.98
Transmembrane Helix	246	267	0.95
Cytoplasmic	268	274	0.90
Transmembrane Helix	275	296	0.91
Non-Cytoplasmic	297	308	0.76
Transmembrane Helix	309	330	0.93
Cytoplasmic	331	493	0.99
Transmembrane Helix	494	516	0.91
Non-Cytoplasmic	517	520	0.91