YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41053557, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	124	0.99
Transmembrane Helix	125	148	0.88
Cytoplasmic	149	157	0.92
Transmembrane Helix	158	179	0.91
Non-Cytoplasmic	180	212	0.95
Transmembrane Helix	213	235	0.87
Cytoplasmic	236	361	0.85
Transmembrane Helix	362	383	0.84
Non-Cytoplasmic	384	390	0.57
Transmembrane Helix	391	411	0.92
Cytoplasmic	412	419	0.59
Transmembrane Helix	420	441	0.91
Non-Cytoplasmic	442	444	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVFSKSLLL IAVGILMSQQ TLAHSHHHHG HGDGGCHGHS HGGAKMHHGA SKWSAEANLP  60
   61 HAEEEHHVHD HGHTHDHAHD HGHAHSHGDI HDHGHAHKHG HAHDHGAEKS KKVVEAGKRN 120
  121 MVELWMQAIG ATLLISAAPF LILFLIPVQS NTDQHQNLLK VLLSFASGGL LGDAFLHLIP 180
  181 HALEPHSHHS QPHSEESHGQ SHGEESHGHS HGAAHGHMMS VGLWVLGGIV AFLVVEKFVR 240
  241 LLKGGHSHSH SHSPSAPKSK DSDEEDDKKG QKKGEKDKVV SQQKPTKKTV ETSSDIKVSG 300
  301 YLNLAADFTH NFTDGLAIGA SFLVGPAVGA VTTITILLHE VPHEIGDFAI LVQSGCTKRK 360
  361 AMCLQLLTAV GALAGTACSL LAEGVGDATT AWILPFTAGG FVYIAAVTVL PELLAGHSSF 420
  421 WQSLLEILAL LFGVGMMVLI AEYE