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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|12619147, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELFSRNVAA FWVILLEFLL GSVAEEEVLM NTKTETSDLK WTTHSRSKPE WEEVSGLDEE  60
   61 NNSVRTYQIC QADGSSSHCV RSKLIERRGA SQVYVELFFT MVECSSRNTH HRSCKETFNL 120
  121 YYYQSDTDDA TATHPAWMEN PYTKVDTVAA DFLLRKGGEK KVNVKTLRLG PLSKRGFYLA 180
  181 FQAQGACMAL LSVRVFFKKC PALTRSLSVF PETVPRSLVQ EAVGQCVANA AQPGPSPRPP 240
  241 KMFCGEDGQW VDQPTTTCTC LPGFEASHGE LECRACPVGL FKMGSGTGPC SVCPENSQTG 300
  301 ETGSAACVCR SGFYRALSDS ADTPCTRPPS SPRSPVPQVN DTSLTLEWSE PLDSGGRSDL 360
  361 SYSVECRMCS TPGSPCTLCS DGVNYRPSQT GIQGRRVSIW GLRPHTTYSF TVMALNGVSA 420
  421 QSQQGPAGET INITTSPNVP VLVSGLRKST ATESSLTLYW NTPTQSHYRI LQYQIRYCEK 480
  481 ERGSEENSCH YMESNNNEVV LSDLRRATQY EVQVRARTFA GYGSFGKAIL FRTLPDEDDS 540
  541 SSPLLVTGIL IAMGMLLLII VIGAAIYCIR KQNNYKDPEL SDKNGQYLMG QGVKVYIDPF 600
  601 TYEDPNEAVR EFAKEIDVSC VKIEEVIGAG EFGEVCRGRL RIPGKKENYV AIKTLKGGYT 660
  661 DKQRRDFLAE ASIMGQFQHP NIIHLEGIIT ASCPVMILTE FMENGALDSF LRLNDGQFTP 720
  721 IQLVGMLRGI ASGMKYLSEM SYVHRDLAAR NILVNSNLVC KVSDFGLSRF LQENSSDPTY 780
  781 TSSLGGKIPI RWTAPEAIAF RKFTCASDVW SYGIVMWEVM SFGERPYWDM SNQDVINAIE 840
  841 QDYRLPPPPD CSTYLHQLML DCWQKERTAR PRFANIVSAL DKLIRNPASL KITAQEGAGP 900
  901 SHPLLDQRSP LTPSSCGTVG DWLRAIKMER YEETFLQAGY TSMQLVTHIN TEDLLRLGIT 960
  961 LAGHQKKILS SIEALGIQNK APGNVLY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle