YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AA2DA_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTPTANST EEAANITASP RLWPYTEPAS AIIILVVSLI ILLTIVGNVL VIVAVLTSRA  60
   61 LRAPQNLFLV SLACADILVA TLVIPFSLAN EIMGYWYFGS TWCAFYLALD VLFCTSSIVH 120
  121 LCAISLDRYW SVTKAVRYNL KRTPRRIKCM IAVVWLISAV ISFPPLIMTK HDEKECLIND 180
  181 ETWYILSSCA VSFFAPGLIM ITVYCKIYRV AKQRSSTVFV AKNGLERQPS QSETCFVRKD 240
  241 KFEKESPSSN SSESAQRQEE LDDIDLEESA ASDSRARGSR FSKRRRVEGE RRGPQRSCRV 300
  301 SWAAHQEPGS RQQQLASKSK VAQMREKRFT FVLAVVMGVF VLCWFPFFFT YSLQAVCGER 360
  361 CGPPEALFKL FFWIGYCNSS VNPIIYTIFN RDFRKAFKKV VCWSAQRT

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.97
Transmembrane Helix	31	56	0.91
Cytoplasmic	57	66	0.88
Transmembrane Helix	67	89	0.91
Non-Cytoplasmic	90	103	0.87
Transmembrane Helix	104	126	0.90
Cytoplasmic	127	146	0.92
Transmembrane Helix	147	168	0.91
Non-Cytoplasmic	169	182	0.95
Transmembrane Helix	183	205	0.94
Cytoplasmic	206	328	0.99
Transmembrane Helix	329	349	0.96
Non-Cytoplasmic	350	369	0.89
Transmembrane Helix	370	389	0.92
Cytoplasmic	390	408	0.92