YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21321603, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEWTILERL LEAAVQQHST MIGRILLTVV VIFRILIVAI VGETVYDDEQ SMFVCNTLQP  60
   61 GCNQACYDKA FPISHIRYWV FQIIMVCTPS LCFITYSVHQ SAKQKERRYS TIYLSLDKDP 120
  121 DTMRRDDSKK IKNTIVNGVL QNTENSTKES EPDCLEVKEI PNSAMRTTKS KMRRQEGISR 180
  181 FYIIQVVFRN ALEIGFLVGQ YFLYGFNVPA VYECDRYPCI KDVECYVSRP TEKTVFLVFM 240
  241 FAVSGICVVL NLAELNHLGW RKIKTAVRGV QARRKSIYEI RNKDLPRMSM PNFGRTQSSD 300
  301 SAYV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	77	0.97
Transmembrane Helix	78	98	0.94
Cytoplasmic	99	180	0.98
Transmembrane Helix	181	202	0.90
Non-Cytoplasmic	203	235	0.93
Transmembrane Helix	236	255	0.93
Cytoplasmic	256	304	0.94