YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33286944, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRVAIIGG GTSGLACIKC CLDEGLEPVC FETSDDIGGL WRFKENPDAG RASIYHSLII  60
   61 NTSKEMMCYS DYPIPAHFPN YMHNSLIMEY FRMYAENFQL KRHIRFQTRV LHVTPRPDFP 120
  121 HSGQWDVETE SKDGQREKQV FDAVMVCTGH HCHPHLPLKD FPGIDTFKGR FFHSRDYKNP 180
  181 EDWRGKRVVV IGIGNSGGDI AVELSRMAKQ VYLSTRKGSW ILNRVGDNGI PSDMLFNRRL 240
  241 QNWFLKMLPV GFVNNMGESR LNKRFDHKLY GLQPEHRFFS QHPMVNDDLP NRILSGTVSV 300
  301 KPNVQEFRGS SVVFEDGTVE DNIDLVVFAT GYTFSFPFLS SHVIPVSNNK VSLYKFVYPP 360
  361 GLERSTLAVI GLIQPLGAIM PISEMQARWA TRVFKGLCKL PSMNAMMNDI KSKEEAMARR 420
  421 YVVSQRHTIQ VDYIPYMDEL AKQVGVRPSI PRLLLTDPRL AFKIIFGPCT PYQFRLHGPG 480
  481 QWEGARQAIL TQWDRVMKPL KTRCREEPQS QSFLHSLIFS VSVAGLLSAL YYGRASLQTF 540
  541 LENPSALLDK IRGFVPLPTQ

Type	Start	End	Confidence
Signal Peptide	1	16	0.59
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	512	0.94
Transmembrane Helix	513	533	0.85
Cytoplasmic	534	560	0.76