YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28394115, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDRDISPDV VDRGESTREE YDDTYKEVAD DEPTVKIVWR NVILMSLLHI AAVYGLFLIP  60
   61 SAHPLTLPWA FACFVYGGLG ITAGVHRLWS HRSYKATLPL RIFLAIGNSM AFQNDIYEWS 120
  121 RDHRVHHKYS ETDADPHNSN RGFFFSHVGW LLVRKHPEVI ERGRKLELTD LKADKVVMFQ 180
  181 RRFYKLSVVL MCFVVPTVVP CYMWGESLWI AYFIPTLLRY ALGLNSTWLV NSAAHMWGNR 240
  241 PYDGNIGPRE NRFVTFSAIG EGFHNYHHTF PYDYSTSEYG WKLNLTTIFV DTMCFLGLAS 300
  301 NRKRVSKELI LARVKRTGDG SYRSG

Type	Start	End	Confidence
Cytoplasmic	1	40	0.95
Transmembrane Helix	41	59	0.93
Non-Cytoplasmic	60	66	0.71
Transmembrane Helix	67	89	0.90
Cytoplasmic	90	182	0.96
Transmembrane Helix	183	204	0.89
Non-Cytoplasmic	205	209	0.71
Transmembrane Helix	210	230	0.69
Cytoplasmic	231	325	0.69