YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27545307, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSHHHGLH HSFRNHSQGA LPVGKPSHGD RGSASGCYEQ LLISTEVFLT LGLVSLLENI  60
   61 LVIAAIVKNK NLHSPMYFFI CSLAVADLLV SVSNASETVV MALITGGNLT NRESIIKNMD 120
  121 NVFDSMICSS LLASIWSLLA IAVDRYITIF YALRYHNIMT QRRAGTIITC IWTFCTVSGV 180
  181 LFIVYSESTT VLICLISMFF TMLALMASLY VHMFLLARLH MKRIAALPGN GPIWQAANMK 240
  241 GAITITILLG VFVVCWAPFF LHLILMISCP RNPYCVCFMS HFNMYLILIM CNSVIDPLIY 300
  301 AFRSQEMRKT FKEICCCWYG LASLCV

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.62
Transmembrane Helix	47	67	0.66
Cytoplasmic	68	75	0.78
Transmembrane Helix	76	96	0.83
Non-Cytoplasmic	97	125	0.85
Transmembrane Helix	126	148	0.82
Cytoplasmic	149	163	0.87
Transmembrane Helix	164	185	0.93
Non-Cytoplasmic	186	191	0.82
Transmembrane Helix	192	216	0.90
Cytoplasmic	217	241	0.91
Transmembrane Helix	242	264	0.90
Non-Cytoplasmic	265	280	0.87
Transmembrane Helix	281	302	0.89
Cytoplasmic	303	326	0.96