YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55251122, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILHLIYDSF DFKSWIIFFV VFLIIAEMIK NRTPSNYPPG PWPLPFLGTV FTKMDFKNIN  60
   61 KLAKVYGKVF SLRVGSEKMI IVSGYKMVKE ALVTQNDSFV LRPPVPLFHK VYKGIGLTMS 120
  121 NGYIWRSHRR FAASHLRTFG EGKKNLELGI QQECVYLCDA FKAEKEPFNP IFILHGAVSN 180
  181 TVACLTFGQR FDYNDEWYQE ILRLDNQCVQ LAGSPRVQLY NAFPKLLDYL PGPHQKVFSN 240
  241 YKKITQSLKD EIIKHREDWD PANPRDFIDN YLTEMEKKKS DPQAGFNIES LIISCLDIVE 300
  301 AGTETGATTL RWGLLFMIKF PEIQKKVQAE IDRVIGQSRQ PCLDDRVNMP YTEAVLHEIQ 360
  361 RFGDVVPLGF PKQAAVDTKI GNYFIPKGTS ITTNLSSVLH DPNEWETPDT FNPGHFLDKN 420
  421 GQFRKRDAFL PFSAGKRACV GELLARNVLF LFFTSLLQQF TLSKCPGEEP SLEGEIWFTY 480
  481 APAPFRISVS VR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.72
Transmembrane Helix	12	29	0.82
Non-Cytoplasmic	30	492	0.94