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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CXAR_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMRTSFLCV TYVILLTGSA CGLQITSTGQ TSIEKASGES VKLDCQFTLA SDDSGPLDIE  60
   61 WSLQPSDNQK EEKVVIVYSG DRAFEHYYDP LKGRVHFNSP DPKNGDASMN IMGLKATDTG 120
  121 TYQCKIKKVP GIASRKYLLT VMVRPSKPKC SAEGQTYVGK NMVLKCSSVE GTQPMEYIWE 180
  181 RTSGNKLLPP LAILDKVTGT MTLKNATGDA SGTYRCQAKN RVGTEECVVE VTITQPPNTA 240
  241 GIIAGVIICI LLLLILLALI LFCCCRARHK KKYEKEIAYE IREDVPPPKS RVSTARSFTS 300
  301 VGSQRSSLGS MSPSNLHEYS KPQYDKIPSE EYDRPPSHAP IPPPSRMAGP NLSRMGAIPV 360
  361 MIPAQNKDGS IV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle