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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24119222, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.68
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLWIYPSL LFFLFPSLTP SQALRNYPEN EVTLLDTMSA LGDLGWEAYP AEGWEEISVM  60
   61 DERNTPMRSY QVCNVMEASQ NNWFRTRHIA REGAQRVYIE IKFTLRDCNS LPGVPGTCKE 120
  121 TFNMYYYESN NPNLWFIKES QYIKIDTIAA DESFTQTDVG DRVMRLNTEI RDINNLSKKG 180
  181 FYLAFQDVGA CIALVSLRVF YKKCPLAVLN LAQFPDTVTG GDSALVEVRG SCVNDSEEFE 240
  241 APRMYCSGDG GWLVPIGRCV CKPGFEENKD YCQACRPGTY KASSMDAYCS KCPPHSFSHQ 300
  301 EKASECSCEK GFYRADMDPR SMACTRPPSA PENPISTLND TSVTLEWSPP RDSGGRGDVT 360
  361 YSIHCRKCAG DGRICSPCSN NVHFVPRQFG LSIPKVLITD LLSNTNYTFS VEAVNGVSDL 420
  421 SPTPKQLVTV NITTSQTVNV ILKERKSKDS ITLAWQGPDR PNGVIVEYEV IYYEKNQRDQ 480
  481 NYTVLKTKGH MMTVEGLKPG TTYVFRVRAR TDGGYGNYGG EIELETSHED MLAIGGPNQS 540
  541 TILAVSIAGG IVLLTFLVAC FVVSGRHCGY IKAKQDPDEE KMQFQNGRVK LPGSRTYIHP 600
  601 HTYEDPNQAV RDFAKEIDAS TIRIERVIGA GEFGEVCSGR LKLPSKREIY VAIKSLKAGY 660
  661 SEKQRRDFLS EASIMGQFDH PNIIRLEGVV TRCKPVMIIT EYMENGSLDT FLKKHDGQFT 720
  721 VIQLVGMMRG IASGMKYLSD MSYVHRDLAA RNILVNSNLV CKVSDFGLSR VLEDDPEAAY 780
  781 TTRGGKIPIR WTAPEAIAYR KFTSASDVWS YGIVMWEVIS YGERPYWEMS NQDVIKAIDE 840
  841 GYRLPAPMDC PVVLHQLMLD CWEKSRSERP KFGQIVNTLD KLIRNPNSLK ELANSSVWED 900
  901 PTTPEFSVST VDEWLDAINM GQYKDNFANA GYVSLDSILY ISMCELSKMD VTLVGHQKKI 960
  961 LSAVQSLHAQ GTHVQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle