YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LFNG_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTYRGKVV VSLAGATVTC LGFLLFLSQH QRIQADGMQN ESEVGLRSLQ SLGDSETDDG  60
   61 AQPEQNAKKG FSAYFSKLTR SRREADKPSE APGAATDAPP AEDISADDIF IAVKTTKKFH 120
  121 RSRLDLLLDT WISRNMRQTY IFTDGEDEEL KKKIGSHAIN TNCSAAHSRQ ALSCKMAVEY 180
  181 DKFIESGKKW FCHVDDDNYV NTKTLVKLLS NYPHTQDMYI GKPSLDRPIE ATERLGDNKM 240
  241 RPVNFWFATG GAGFCISRGL ALKMSPWASG GHFMNTAEKI RLPDDCTIGY IIESVLGVSL 300
  301 TRSSLFHSHL ENLQQVSKSE VHKQITLSYG MFENKRNIIN MKGAFSVEED PSRFKSVHCL 360
  361 LYPDTPWCPP QVAY

Type	Start	End	Confidence
Signal Peptide	1	35	0.90
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	374	0.95