YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858503, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWNFLGGI LEEVHIHSTM VGKIWLTILF IFRMLVLGVA AEDVWNDEQA DFICNTEQPG  60
   61 CRNVCYDKAF PISLIRYWVL QVIFVSSPSL VYMGHALYRL RALEKERQRK KMALRRELEG 120
  121 VDVEMAEVRR KIERELRQID QGKLNKAPLR GSLLRTYVAH IVTRSAVEVF FMTGQYVLYG 180
  181 FQLNTLYKCE REPCPNAVDC FVSRPTEKSV FMVFMQCIAG ISLFLNILEI LHLGYKKLKK 240
  241 VILNYYAQLR DDPNDSYYPN KVKKDSVVHQ TCIGTSTGRK ATIASAPSGY NLHLDRPPDG 300
  301 AAYPPLINPS SAFLPVQGDL PAKNGADEPK YLQNSPTEHN SNSNNTSSDS HSPPCNSVTP 360
  361 PKQDEGEDSV QTLPLHKKGQ ESKLSESSSH TRESSHASSS MVKKPWKGSA PWNCSTVVEG 420
  421 NGSDSDSLEG SKARCPYSAV RARTSSRSDT KLSRPTSPDS VEESSSESRH SPRASPSHRA 480
  481 SLASSSSSRR AAPTDLQI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	41	0.89
Non-Cytoplasmic	42	77	0.93
Transmembrane Helix	78	99	0.90
Cytoplasmic	100	155	0.93
Transmembrane Helix	156	177	0.54
Non-Cytoplasmic	178	210	0.63
Transmembrane Helix	211	233	0.80
Cytoplasmic	234	498	0.62