YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4959542, gi\|1...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFIQLFIL TTAISLTQGF QHEDIKQALL QKLGLTEPPR IQKRDLENLV VPAHIKSKYL  60
   61 SMLKLHHQRR RRSLPSLAGI LRGIHGNADI TGEIKYSDTT RQRLVFDMEA RLQENTEVTM 120
  121 AELKLFQTAA QSPSKPERRH HRPINHARVS IYWVEVLENG SNRTSLLDSR LVPIHESGWR 180
  181 SFDVTQAIHY WSKSQKKAPL HLEVWTEGER PGSYAAEMAK RVRFATQDPK ENTLEKDMGA 240
  241 PELVLYTLDL DEYGSQGNCN SSPNSSKCCR EEHFINFREL TWTQYWIIEP AGYQAFRCAG 300
  301 GCKQPKRGFY GYGQRTCAVM ESAPLPMMYL VKKGDYTEIE VAEFPNMIVE KCGCSMDKIP 360
  361 PV

Type	Start	End	Confidence
Signal Peptide	1	19	0.94
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	362	0.99