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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|24371280, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGRIIGFVL FIAVTHVCTG SRLRQEDYAP RIVEHPSDLI VSKGEPATLN CKAEGRPTPT  60
   61 VEWYKDGERV ETDRDNPRSH RMLLPTGSLF FLRIVHGRRS KPDEGSYVCV ARNYLGEAVS 120
  121 HNASLEVAIL RDDFRQNPVD VMVAAGEPAV MECQPPRGHP EPTISWKKDG VNIDDRDERI 180
  181 TIRGGKLMIT NTRKTDAGKY VCVGTNMMGE RESEIAELTV LERPSFLRKP SSQSVLVDQS 240
  241 VEFRCEAQGD PVPTIRWRKE DGELPKGRYE IWEDHTLKLK RLTSGDAGTY TCQAENMMGK 300
  301 TEASATLTVH VPPVFVVRPR NQVAGMGRTV TFQCEATGSP QPAIFWQKEG SQNLLFSSQP 360
  361 PPPSSRFSVS QTGDLTITAV ERSDGGYYSC QALNIAGSVI TKALLEVTDV ISDRPPPIVR 420
  421 QGPTNQTVAV DGTVVLSCQA TGTPIPTILW RKDGVLVSTH DSRLKQLDTG ALQIRYAKLG 480
  481 DTGMYTCTAS TPSGEASWKA YLEVQEFGAP VQPGRPTDPN LIPSAPSKPD VTDVSRTSVS 540
  541 LSWKPNLNAG ATPTSYVIEA FSHAAGSSWQ TLADHVKTES FVLKGLKPSA VYLFLVRAAN 600
  601 AYGLSDPSPI SDAVKTQDVP PTSQGVEHGQ IQRELGDVVI HLHNPTILSS SSVRVQWTVE 660
  661 QQPQYIQGYK VMYRPSPEGA PQRVDWAMFE VGAPGEHSAV VTQLKKGITY EFKVRPFFNE 720
  721 FQGTDSDIKV GKTLEEAPSA APRGVTVTGS GDNGTAVLVA WQPPPEEEQN GVVQEYKIWC 780
  781 LGNESRYHIN RTVDGSTHSV LIPGLVAGVT YRLEVAAGTG AGPGVKSDPT SFQLDSSGRV 840
  841 LPPPLDDDNT ISQQISDVVR QPAFIAGIGA ACWIILMVFS IWLYRHRKKR NGLSSSYAGI 900
  901 RKVPSFTFTP TVAYQRGGEA VSSAGRPGLL NIGEPATQPW LADTWPNSCS NHNDCTINCC 960
  961 TGSNGNSDSN LATYSRPADC IANYSNQMDN KATNLLAPDT GLYSDVDLSN KINEMKTFNS1020
 1021 PNLKDGRFMG PGGQPTPYAT TQLIQSSLAN NNMNSSSGGS GGGSADFNEK QSWKSSQGTP1080
 1081 QKQADINTPL QYNVMEQNKL NKDHYRDEGP ISVTIPYNQA QDVLTGETYS SSDRGSSTSG1140
 1141 SQGQKKGGRT TKQAKQNPMN WTELLPPPPV NPPPCQEYTL VMDDSYDTDL QCPLPPSRMY1200
 1201 LQPDELEEEE DEVELERGPT PPVRGAASSP AAVSYSHQST ATLTPSPQEE MHPMLQDNPD1260
 1261 LHERRRLLVS PPPPPRPLSP APMLQDNPDL HERRRLLVSP PPPPRPLSPP HTYGYISSPL1320
 1321 GLDTDGLEEE DDDEEEGDET DAEVARVHQH HMMHPHQQHL PQQRALLRGA GTNPGLQHLW1380
 1381 LESSVTGSMI NGWGSASEED NASSGRSSAV SSSDGSFFTD ADFAQAAAAA AEYAGLRVAK1440
 1441 HPGKGHHQLP VSGARKYQNL PAGHRPGSPV STDSNVSAAP GQRRPLKRQK QHPAAQTGYQ1500
 1501 RREAYTEDLP PPPIPPPAML KSPTHQAKTI PEGPRGAMSP RSSSADGKDR RTGAGGPRVR1560
 1561 DGSDTRTSSS ERRDGQDVQR GQRTGKNSKQ DAAVKSRQHP GSEDILPYSR PSFPAVHSPR1620
 1621 GERDPSSSSS LSSRGSGGRR RGEGPPGARR NPADIGLNTI GAFQTGGDEL EMVGS

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