YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859031, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.52
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQNLFIFH LLLFLFPDGY YHSRLTKCIF QLQDLSDIGV HDNYIFNKDV YIRFNSTLGY  60
   61 FVGYTEHGVY NAQLWKQRYQ LLEQERAHED RFCKYNAEID YNNILGKTVK PQVKLNSVKQ 120
  121 AGGRQPAVLV CSAYDFYPKR IKVTWLRNGK PVTTDVTSTE ELADGDWYYQ IHSHLEYTPK 180
  181 SGEKISCMVD HASSTEPIII AWDSSLSEPE RNKIAIGASG LVLGIIIATA GLIYYKKKSS 240
  241 GQFK

Type	Start	End	Confidence
Signal Peptide	1	19	0.52
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	213	0.95
Transmembrane Helix	214	235	0.96
Cytoplasmic	236	244	0.92