YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7544104, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASSAAVNA VSPAEDPFSA PLSSIAPWNY SVLAALMFVV TALSLSENFT VMLVTFRFQQ  60
   61 LRQPLNYIIV NLSLADFLVS LTGGSISFLT NYHGYFFLGK WACVLEGFAV TFFGIVALWS 120
  121 LAVLAFERFF VICRPLGNIR LRGKHAALGL VFVWSFSFIW TVPPVLGWSS YTVSRIGTTC 180
  181 EPNWYSGNFH DHTFIITLFS TCFIFPLGVI IVCYCKLIRK LRKVSNTHGR LGNARKPERQ 240
  241 VTRMVVVMIV AFMVAWTPYA AFSIIITAHP SMHVDPRLAA IPAFVAKTAA VYNPIIYVFM 300
  301 NKQFRKCLVQ LLSCSKVTVV EGNNNQTTER AGMTSGSNTG EMSAIAARVS VPKTEENPGD 360
  361 RSTFSHIPIP ENKVCPM

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.90
Transmembrane Helix	32	54	0.84
Cytoplasmic	55	66	0.86
Transmembrane Helix	67	89	0.90
Non-Cytoplasmic	90	106	0.79
Transmembrane Helix	107	126	0.91
Cytoplasmic	127	144	0.80
Transmembrane Helix	145	164	0.91
Non-Cytoplasmic	165	193	0.90
Transmembrane Helix	194	215	0.96
Cytoplasmic	216	243	0.91
Transmembrane Helix	244	266	0.88
Non-Cytoplasmic	267	277	0.87
Transmembrane Helix	278	299	0.83
Cytoplasmic	300	377	0.90