YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220672848, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFYDSIILD NSSDSGSGDY DGEELCDLSV SNDFQKIFLP TVYGIIFVLG IIGNGLVVLV  60
   61 MGFQKKSKNM TDKYRLHLSI ADLLFVLTLP FWAVDAVSGW HFGGFLCVTV NMIYTLNLYS 120
  121 SVLILAFISL DRYLAVVRAT NSQNLRKLLA GRVIYIGVWL PATFFTIPDL VFAKIHNSSM 180
  181 GTICELTYPQ EANVIWKAVF RFQHIIIGFL LPGLIILTCY CIIISKLSKN SKGQTLKRKA 240
  241 LKTTVILILC FFICWLPYCA GILVDALTML NVISHSCFLE QGLEKWIFFT EALAYFHCCL 300
  301 NPILYAFLGV RFSKSARNAL SISSRSSHKM LTKKRGPISS VSTESESSSA LTS

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.97
Transmembrane Helix	41	63	0.92
Cytoplasmic	64	75	0.90
Transmembrane Helix	76	94	0.90
Non-Cytoplasmic	95	111	0.65
Transmembrane Helix	112	134	0.82
Cytoplasmic	135	147	0.94
Transmembrane Helix	148	172	0.84
Non-Cytoplasmic	173	203	0.95
Transmembrane Helix	204	224	0.96
Cytoplasmic	225	243	0.92
Transmembrane Helix	244	264	0.95
Non-Cytoplasmic	265	291	0.84
Transmembrane Helix	292	312	0.88
Cytoplasmic	313	353	0.97