YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859315, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.88
Transmembrane Helix	12	31	0.95
Non-Cytoplasmic	32	58	0.92
Transmembrane Helix	59	78	0.95
Cytoplasmic	79	85	0.80
Transmembrane Helix	86	107	0.89
Non-Cytoplasmic	108	118	0.77
Transmembrane Helix	119	140	0.86
Cytoplasmic	141	147	0.75
Transmembrane Helix	148	167	0.88
Non-Cytoplasmic	168	177	0.71
Transmembrane Helix	178	197	0.95
Cytoplasmic	198	211	0.74
Transmembrane Helix	212	232	0.83
Non-Cytoplasmic	233	245	0.73
Transmembrane Helix	246	268	0.89
Cytoplasmic	269	276	0.71
Transmembrane Helix	277	294	0.78
Non-Cytoplasmic	295	300	0.67
Transmembrane Helix	301	321	0.92
Cytoplasmic	322	338	0.87
Transmembrane Helix	339	359	0.90
Non-Cytoplasmic	360	406	0.89
Transmembrane Helix	407	430	0.87
Cytoplasmic	431	472	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNSTNLRL RLPALIFASE VVIVVLYACF VTYDDHANAL LQNNQTRHME NSFYQNYPFF  60
   61 ADIQVMIFIG FGCLLAFFRR YGFGGMVFNF LVATFTIQWA ILIQGFFQFF YDGKIHLSVL 120
  121 NLINAEFACA VVLISFGAVL GKTSPVQLLI MALLEIPLFG VTEWAVLKYL RINDAGGSIL 180
  181 IHIFACYFGL GVTFVLYRPS LNEGHPKVST SYQSDLLSVM GTLFLWVFWP SFNSALTFKG 240
  241 DDQHRAVLHT FIGLSASTIT AFALSSMLSK NGKISMADVQ NVTLAGGVTV GASVDMMISP 300
  301 AAAYVLGVMG CFACMLGYKY LSPVLAQKLR IQDQCGIHNL HGLTGLISSL AGICAILLAT 360
  361 EETYGPSLYE TFSHQAPPEG DPQLMELQQL IPDLEAGLGR SAKEQALFQV AALFGTIAVS 420
  421 AVGGMLTGVV LKLPFLASPS DEQCFDDEVF FTVPSDYDCV NVLSETSKAE NE