YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2739231, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSVIPGAD IPDLYSINPF NVTFPDDVLS FVPDGRNYTE PNPVKSRGII IAISITALYS  60
   61 VICVVGLLGN ILVMYGVVRY TKLKTATNIY IFNLALADAL ATSTLPFQST KYLMNTWPFG 120
  121 ELLCKVVIAI DYYNMFTSIF TLTMMSVDRY IAVCHPVRAL EFRTPIKAKI INVCIWILSS 180
  181 AVGVPIMIMA VTRVTNQNTT VCMLKFPDPD WYWDTVTKIC VFIFAFVVPV LVITICYGLM 240
  241 ILRLKSVRLL SGSKEKDRNM RRITRMVLVV VAAFIICWTP IHIFIIEKTL VDINQKNPFV 300
  301 IASWHLHRTG YTNSSLNPVL YAFLDENFKR CFRDFCLPFR TRADQSNLNR ARNATREPVS 360
  361 VCALRIQERS RYD

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.67
Transmembrane Helix	49	78	0.77
Cytoplasmic	79	88	0.58
Transmembrane Helix	89	107	0.75
Non-Cytoplasmic	108	128	0.71
Transmembrane Helix	129	152	0.65
Cytoplasmic	153	169	0.91
Transmembrane Helix	170	191	0.91
Non-Cytoplasmic	192	218	0.93
Transmembrane Helix	219	242	0.93
Cytoplasmic	243	262	0.95
Transmembrane Helix	263	285	0.93
Non-Cytoplasmic	286	373	0.95