YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10505341, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.96
Transmembrane Helix	128	151	0.89
Non-Cytoplasmic	152	195	0.90
Transmembrane Helix	196	216	0.80
Cytoplasmic	217	226	0.74
Transmembrane Helix	227	246	0.77
Non-Cytoplasmic	247	253	0.71
Transmembrane Helix	254	275	0.93
Cytoplasmic	276	350	0.85
Transmembrane Helix	351	369	0.68
Non-Cytoplasmic	370	387	0.57
Transmembrane Helix	388	413	0.87
Cytoplasmic	414	690	0.60
Transmembrane Helix	691	709	0.40
Non-Cytoplasmic	710	717	0.66
Transmembrane Helix	718	741	0.81
Cytoplasmic	742	752	0.71
Transmembrane Helix	753	775	0.78
Non-Cytoplasmic	776	791	0.84
Transmembrane Helix	792	815	0.83
Cytoplasmic	816	835	0.86
Transmembrane Helix	836	860	0.89
Non-Cytoplasmic	861	890	0.90
Transmembrane Helix	891	910	0.73
Cytoplasmic	911	920	0.68
Transmembrane Helix	921	944	0.90
Non-Cytoplasmic	945	1170	0.84
Transmembrane Helix	1171	1191	0.80
Cytoplasmic	1192	1202	0.79
Transmembrane Helix	1203	1223	0.84
Non-Cytoplasmic	1224	1237	0.74
Transmembrane Helix	1238	1259	0.86
Cytoplasmic	1260	1283	0.84
Transmembrane Helix	1284	1310	0.89
Non-Cytoplasmic	1311	1367	0.84
Transmembrane Helix	1368	1388	0.55
Cytoplasmic	1389	1407	0.55
Transmembrane Helix	1408	1433	0.85
Non-Cytoplasmic	1434	1489	0.61
Transmembrane Helix	1490	1510	0.84
Cytoplasmic	1511	1521	0.59
Transmembrane Helix	1522	1545	0.89
Non-Cytoplasmic	1546	1553	0.57
Transmembrane Helix	1554	1575	0.89
Cytoplasmic	1576	1599	0.52
Transmembrane Helix	1600	1621	0.55
Non-Cytoplasmic	1622	1622	0.45
Transmembrane Helix	1623	1645	0.83
Cytoplasmic	1646	1658	0.72
Transmembrane Helix	1659	1676	0.87
Non-Cytoplasmic	1677	1710	0.75
Transmembrane Helix	1711	1734	0.88
Cytoplasmic	1735	1949	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPLLAPPG PNSYKYFTRE SLREIEKRIE EEKAKPPPKP DNSYRDDDDE NKPKPNGDLE  60
   61 AGKSLPFIYG DIPPGMVATP LEDFDPFYIN QKTFVVLNKG KTIFRFSATP ALYMISPFNL 120
  121 ARRIAIKILI HSVFSMFIMC TILTNCVFMT FSNPPEWSKQ VEYTFTGIYT FESAVKIIAR 180
  181 GFCIDGFTFL RDPWNWLDFM VISMAYVTEF VDLGNVSALR TFRVLRALKT ISVIPGLKTI 240
  241 VGALIQSVKK LSDVMILTVF CLSVFALIGL QLFMGNLRQK CVIWPINITE MFPDVNGSRA 300
  301 FNWDEYILNE TNFYFLPDQL DALLCGNSSD SGRCPEGYTC MKAGRNPNYG YTSFDSFGWA 360
  361 FLALFRLMTQ DFWENLYQLT LRAAGKTYMI FFVLVIFVGS FYLVNLILAV VAMAYEEQNQ 420
  421 ATMEEAERKE AEFKAMLEQL KKQQEDAQAN AMATSAGTVS EDVVEDDGDG EGNLSCSSSE 480
  481 MSKLSSKSAK ERRNRKKKWR QKEQDKEKGD SEKFVKSESD DGSRRRFRFP DNRLGRRSSI 540
  541 MNQSLLSIPG SPFPSRRNSK SSIFSRCKDG GSENEFADDE HSTVEEYDER RDSFLSPQRR 600
  601 SSYTGFYGKR NSTVDCNGVV SLIGPGPGGR LLPEPTTDLE IKKKLSGSLM VSVEQLNTSF 660
  661 GRKERANSVM SALTNTLVEE LEESQRKCPP CWYKFANTFL IWECGPLWMS IKEIVNLIVM 720
  721 DPFVDLAITI CIVLNTLFMA MEHYPMTPQF EHVLSVGNLV FTGIFTAEMF AKLVAMDPYY 780
  781 YFQEGWNIFD GFIVSLSLME LGLANVEGLS VLRSFRLLRV FKLAKSWPTL NMLIKIIGNS 840
  841 VGALGNLTLV LAIIVFIFAV VGMQLFGKSY KDCVCKIAQD CELPRWHMND FFHSFLIVFR 900
  901 VLCGEWIETM WDCMEVAGQA MCLIVFMMVM VIGNLVVLNL FLALLLSSFS ADNLAASDDD 960
  961 GEMNNLQIAV IRIKKGIAWV KAKVRELVNI ILGRKVTDEA KPLDDMYDRK LNCIANHTGV1020
 1021 DISRDLDYQK NGNGTTSGIG SSVGKYMIDD DHMSFIHNPN LTVCVPIAVG ESDFENLNTE1080
 1081 DFSSESEAEG SKELDDISSS EGSTIDIKPE VEEAVVVETV EEYVDPEACW TEACIARYKC1140
 1141 CDVPITEGWG KNWWFLRKTC YLIVEHNWFE TLIIFMILLS SGALAFEDVY IEQRKTIRII1200
 1201 LEYADMVFTY IFILEMLLKW VAYGFVKYFT NAWCWLDFFI VDVSIVSLIA NALGYSDLGP1260
 1261 IKSLRTLRAL RPLRALSRFE GMRVVVNALV GAIPSIMNVL LVCLIFWLIF SIMGVNMFAG1320
 1321 KYYYCYNETE KAYFELDVVN NKSECFALIE QNYTEVRWKN VKINFDNVGA GYLALLQVAT1380
 1381 FKGWMDIMYA AVDSRRVEDQ PKYEDNIYMY IYFVIFIIFG SFFTLNLFIG VIIDNFNQQK1440
 1441 KKFGGQDIFM TEEQKKYYNA MKKLGSKKPQ KPIPRPQNKL QGMVFDFVTQ QVFDISIMIL1500
 1501 ICLNMVTMMV ETDDQSQETE NILYWINFIF IVAFTSEFVL KLFALRHYYF TNGWNIFDCV1560
 1561 VVILSIVGMF LADLIEKYFV SPTLFRVIRL ARIGRILRLI KGAKGIRTLL FALMMSLPAL1620
 1621 FNIGLLLFLV MFIFSIFGMS NFAYVKRESG IDDMYNFETF GNSMICLFMI TTSAGWDGLL1680
 1681 APILNYPPDC EPTKENPGTS VKGNCGNPSV GIFFFVMYII VSFLIVVNMY IAIILENFSV1740
 1741 ATEESADPLC EDDFESFYEI WEKFDPTASQ FITFAKLGDF ADTLEHPLRV PKPNTIELIA1800
 1801 MDLPMVSGDR IHCLDILFAF TKRVLGDSGD LDMMRQQMEE RFIAANPSKV SFEPITTTLR1860
 1861 RKQEHMSAGV IQRAFRAHLI RKGFICKRLL SSSRLENGGT NQDKKEGTPS TASLPSYDSV1920
 1921 TKPEKEKLEE SDSKGKKGKN QKDVKESKF