YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859377, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.87
Transmembrane Helix	72	96	0.78
Non-Cytoplasmic	97	112	0.78
Transmembrane Helix	113	133	0.76
Cytoplasmic	134	139	0.46
Transmembrane Helix	140	174	0.56
Non-Cytoplasmic	175	195	0.57
Transmembrane Helix	196	215	0.60
Cytoplasmic	216	323	0.52
Transmembrane Helix	324	349	0.87
Non-Cytoplasmic	350	374	0.50
Transmembrane Helix	375	409	0.76
Cytoplasmic	410	418	0.60
Transmembrane Helix	419	438	0.84
Non-Cytoplasmic	439	448	0.76
Transmembrane Helix	449	468	0.94
Cytoplasmic	469	488	0.88
Transmembrane Helix	489	509	0.93
Non-Cytoplasmic	510	515	0.73
Transmembrane Helix	516	537	0.92
Cytoplasmic	538	631	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRPKHEHE SDEKQPETLD GARKKSLSMA PAVSTAALIE DDPWEMMELQ DTGVKWADLD  60
   61 TKKKVLRVFT TAAKLIMLLG LLYMFVCSLD VLSSAFQLVG GKAAGDIFQE NKVLSNPLAG 120
  121 LVIGMLVTLL VQSSSTSSSI VVSMVSSGML EVATAVPIIM GTNIGTSVTN TLVAIAQVGD 180
  181 RNKFRRAFAG ATVHDFFNWL SVLVLLPLEV ASGYLEKVTS LIVRSFNIES GEKAPALLNV 240
  241 ITDPLTHSII QLDESVMSGI AVGDPEARNK SLIKVWCHTA SNTTVQNVTT TNCTDLCWEL 300
  301 KNVTEIINIK KCSHIFVNTS LSDLAVGLIL LAGSLLILCT CLICIVKLLN SMLKGQVAVV 360
  361 IKKIVNTDFP FPFAWLTGYI AILVGAGMTF IVQSSSVFTS AITPLVGIGV ISIERAYPLS 420
  421 LGSNIGTTTT AILAAMASPG ETLGNSLQIA LVHFFFNLSG ILLWYPIPIT RIPIRLAKGL 480
  481 GETTAQYRWF AAFYIILCFF GLPLLVFGLS MAGWQVLMGV LVPIAVILIF AIIVNILQKH 540
  541 KPQWLPSALR SWDFLPLWAH SLDPWDRVVT VIAARCCCCC KCCNSNEEDE KAKLENLANG 600
  601 IEINDNTMTT VEIIEPKKTV DSCEILKATS L