YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18859319, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.82
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPLTHLLLC GLVYFNQVDG SRLRQEDSPP RIVEHPSDLI VSKGEPATLN CKAEGRPTPT  60
   61 VEWYKDGERV ETDKDDPRSH RMLLPSGSLF FLRIVHGRRS KPDEGAYVCV ARNYLGEAVS 120
  121 RNASLEVALL RDDFRQNPTD VVVAAGEPAI LECVPPRGHP EPTIYWKKDK VRIDEKDDRI 180
  181 KIRGGKLMIS NTRKSDAGMY ICVGTNMVGE RDSETAQVTV FERPTFLRRP TNQVVLEEEA 240
  241 VEFRCQVQGD PQPSIRWKKD DVEIPRGRYD MKFDKDDFTL RIKKATASDE GTFTCVAENR 300
  301 VGKMEASATL TVRARPVAAP QFVIRPRDQI VAQGRTASFP CETKGNPQPA VFWQKEGSQN 360
  361 LLFPNQPQQP NSRFSVSPSG DLTITAVQRA DAGYYICQAL TVAGSILAKA QLEVTDVLTD 420
  421 RPPPIIRQGP ANQTLGVDSV ALLRCHASGE PVPTISWLKD GVSLLGKDPR MSLQDLGSLQ 480
  481 IKGLRLSDSG IYTCVAASSS GETSWSAFLE VKEAGSLVVV KDRDENELPG PPSKPQVTDV 540
  541 TKNSVSLSWQ PGLPGASAIS TYVIEAFSQS VSNSWQTVAD HVKTTQYTIK GLRPNTIYLF 600
  601 MVRAVNVQGL SDPSPMSEPV RTQDISPPAQ GGDHRHVQKE LGEVIVRLHN PVVLSPTTIQ 660
  661 VTWTVDRQSQ FIQGYRVLYR QMSGLSSPGA WQTQDVKVPS ERSMVLSALK KGIVYEIKVR 720
  721 PYFNEFQGMD SESRTARTTE EAPSAPPQQV TVLTVGNQNS TSISISWDPP PAEHQNGIIQ 780
  781 EYKIWCLGNE TRFHVNKTVD AAIRSVVVGG LQAGVQYRVE VAASTSAGVG VKSEPQTIII 840
  841 GKDFRDVMIS RNNSITEQIT DVVKQPAFIA GIGGACWVIL MGFSIWLYWR RKKRKGLSNY 900
  901 AVQSFTFTPA VTFQRVDGGL MSNGSRPGLL NASDSGYPWL ADSWPPSLPV NSGSGGPNDL 960
  961 SFGRGDVMPS AQADKTGTML SDGAIYSSID FTTKGGFGSP SPASQATPYA TTQILHSNSI1020
 1021 HELAVDLPEA QWKTSLQAKQ EMASLGYSLP DKNSCNNTLL FIPDYRLADG LSNRMPHNQS1080
 1081 QDFSTTSSHN SSDRSNSLSG GKGGKKKKTK ANVKPTKMNG SNWANVPLPP PPIHPLPGTE1140
 1141 MDHYASEHHD GGGYDSDGWG PPLPVQTYLH QGLEDELEEE EERVPTPPIR GVASSPAAVS1200
 1201 FGKQSTATLS PSPREEMQPM LQAHLDELTR AYQLDMAKQT WHMQGGPYPP QAPAPPVGYI1260
 1261 SSTLVSDIET DLPDEDDDDE EDEGYEMSPP IRGTEHTPGS SMDNLDSSVT DKGLPHRPRP1320
 1321 ASPFSTDGST VGTHSLGHQR AARPTRKHKG PGTVPNRRDA SADDLPPPPE PPPCQTARIP1380
 1381 GSRNVPHPCD RKASSLERQP MMGLEEMRSS LDRQARTSLD RHQQVQDRLG SIERGDESRR1440
 1441 GQKNGPFSEE ALLPYNKPSF PSPGGHSSSG TASSKGSTGP RKGEGTRGQH QRSTTEQGES1500
 1501 SYMGTNAQFS GEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle