YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSF1R_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFALLFLIG ILLGQVQGWS EPRIRLSSGA LAGTDVILES GSPLQLVCEG DGPVTFLPRL  60
   61 AKHKRYISKE VGKIRSFRVE KTTVDFTGTY KCVYMNGNDS NLSSSVHVFV RDSRVLFVSP 120
  121 STSLRYVRKE GEDLLLPCLL TDPEATDFTF RMDNGSAAPY GMNITYDPRK GVLIRNVHPG 180
  181 FNADYICCAR IGGAEKVSKI FSINIIQRLR FPPYVYLKRN EYVKLVGERL QISCTTNNPN 240
  241 FYYNVTWTHS SRMLPKAEEK STMEGDRLAI ESILTIPSVQ LSHTGNITCT GQNEAGANSS 300
  301 TTQLLVVEEP YIRLSPKLSS KLTHRGLSIE VSEGDDVDLG VLIEAYPPLT SHKWETPTSH 360
  361 NASLPENRFF NHNDRYEALL LLKRLNFEEI GQYTLNVKNS MKSASITFDI KMYTKPVARV 420
  421 KWENVTTLSC RSYGYPAPSI LWYQCTGIRT TCPENTTDLQ PIQTQTVEFQ KESFGAVGVE 480
  481 SVLTVGPNRR MTVVCVAFNL VGQGSDTFSM EVSDQIFTSA MCGSTVAMVV LGLLLIFMIY 540
  541 KYKQKPRYEI RWKIIEATNG NNYTFIDPTQ LPYNEKWEFP RDKLKLGKTL GAGAFGKVVE 600
  601 ATAYGLGKED NITRVAVKML KASAHPDERE ALMSELKILS HLGQHKNIVN LLGACTHGGP 660
  661 VLVITEYCCH GDLLNFLRSK AENFLNFVMT IPNFPEPMTD YKNVSTERMF VRSDSGISST 720
  721 CSDHYLDMRP VTSRPTNSAL DSSSECQEDS WPLDMDDLLR FSSQVAQGLD FLAAKNCIHR 780
  781 DVAARNVLLT NSRVAKICDF GLARDIMNDS NYVVKGNARL PVKWMAPESI FECVYTVQSD 840
  841 VWSYGIMLWE IFSLGKSPYP NILVDSKFYK MIKCGYQMSR PDFAPPEMYT IMKMCWNLDA 900
  901 AERPTFSKIS QMIQRMLGET SEQQDTQEYK NIPTEAEAEQ QLESCDPVKH EDESFETSCD 960
  961 QEEEDQPLMK PNNYQFC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle