YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47937822, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAQNKDDGG WKKFVWNSEK KEFLGRTGGS WAKIFLFYLI FYGCLAGIFI GTIQILLLTL  60
   61 SDYKPTWQDR VAPPGLTHFP RSDKSEIAIN LDDEVSFLNY VKVMREFLTS YDQEKQLDNM 120
  121 QFENCGESPL DYKNRGDLES DVGVRRACQF SREWLGPCSG LDDPYFGFKE GKPCLIAKLN 180
  181 RIVNFRPKPP VSNESIPEEV QHKVQPYLIP IHCTNKKEED AGKLGEVRYY GFGGGFPLQY 240
  241 YPYYGKLLHP QYLQPLVAIQ FLNITPNTDM RIECKVYGEN IYYHDKDRYQ GRFDVKFNIK 300
  301 KS

Type	Start	End	Confidence
Cytoplasmic	1	33	0.89
Transmembrane Helix	34	58	0.87
Non-Cytoplasmic	59	302	0.91