YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859151, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMENTGNISD LLYALSNPMV SNSSILCRNF SNSSGLVNMN SSVCDRTPEL DKSSTPVIVA  60
   61 IIITALYSIV CVMGMGLVGN VLVMYVIIRY TKMKTATNIY IFNLALADSL ATSTLPFQSV 120
  121 NYLMGTWPFG DELCKIVMSI DYYNMFTSIF TLTTMSVDRY IAVCHPVKAL DFRTPRNAKI 180
  181 VNVCNWILSS AIGLPVMVMA STTSDLHSNG IIDCTLLFPH PSWYWENLLK ICVFIFAFIM 240
  241 PVLIITVCYG LMILRLKSVR MLSGSKEKDR NLRRITRMVL VVVAVFIVCW TPIHIFVIIK 300
  301 ALVTIPNSLL QTITWHFCIA LGYTNSCLNP VLYAFLDENF KRCFREFCVP SPSVLDLQNS 360
  361 TRSRNPQRDG QSSGHTVDRT NQQV

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.78
Transmembrane Helix	63	88	0.86
Cytoplasmic	89	98	0.83
Transmembrane Helix	99	120	0.81
Non-Cytoplasmic	121	142	0.80
Transmembrane Helix	143	162	0.78
Cytoplasmic	163	181	0.87
Transmembrane Helix	182	202	0.91
Non-Cytoplasmic	203	230	0.93
Transmembrane Helix	231	254	0.93
Cytoplasmic	255	274	0.95
Transmembrane Helix	275	298	0.90
Non-Cytoplasmic	299	312	0.88
Transmembrane Helix	313	336	0.83
Cytoplasmic	337	384	0.92