YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190340161, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.92
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	144	0.99
Transmembrane Helix	145	169	0.91
Cytoplasmic	170	177	0.93
Transmembrane Helix	178	197	0.90
Non-Cytoplasmic	198	246	0.84
Transmembrane Helix	247	265	0.72
Cytoplasmic	266	273	0.77
Transmembrane Helix	274	296	0.90
Non-Cytoplasmic	297	315	0.92
Transmembrane Helix	316	339	0.90
Cytoplasmic	340	359	0.96
Transmembrane Helix	360	381	0.89
Non-Cytoplasmic	382	398	0.86
Transmembrane Helix	399	420	0.84
Cytoplasmic	421	536	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGATLIVRTL GFLFCGTLLS FVYGLVDADD VLTKEEQIYL LFNAKRKCER AIKSKHKTSE  60
   61 GSCLPEWDGI LCWPEGVPGK MVSTSCPEYI YDFNHKGHAY RRCDLNGTWE LASHNNKTWA 120
  121 NYSECAKFFP HYNQNQEREV FDRLYLIYTV GYSISLGSLM VATVILGYFR RLHCTRNYIH 180
  181 MHLFLSFMLR AISIFVKDVV LYSGSALQEM ERITVEDLKS ITEAPPANKT QFIGCKVAVT 240
  241 LFLYFLATNY YWILVEGLYL HSLIFMTFFS DRKYLWGFTL IGWGVPAMFV TIWASVRATL 300
  301 ADTECWDLSA GNLKWIVQIP ILTAIVVNFL LFLNIIRVLA TKLRETNAGR CDTRQQYRKL 360
  361 LKSTLVLMPL FGVHYIVFMA MPYTEVSGVL WQIQMHYEML FNSVQGFFVA IIYCFCNGEV 420
  421 QAEIKKAWNR RTLALDFKRK ARSGSNTYSY GPMVSHTSVT NVTARGPLAL HLTNRLGHVT 480
  481 TNGHRNLPGY IKNGSVSENS IPSSGHELHI QEEEPSKTFQ MEKTIQVVEE ERETVM