YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858519, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSSSIRMS SGGSSRLSVG GGASRVSGVR AGSVYGGAGG SGVRISSSSA SRSYSAGGGA  60
   61 GFGGGAGAGF NLSDAIDVPT NEKATMQNLN DRLASYLEKV RSLEKANADL ELKIRQFLDS 120
  121 KATPNARDYS AYYATISDLQ AKILHATGVN GGIYLSIDNA KLAADDFRVK YENELSMRQS 180
  181 VEADIVGLRK VLDELTMTRS DLELQIEGLK EELIFLKKNH EEELLAARTQ MSGQVNVEVD 240
  241 AAPQEDLTKI LADIREHYEA VSAKNRKDLE SWFQAKSESL NKEVAVSTET LQTSRSEITE 300
  301 VKRTLQSLEI ELQSQLSMKA SLEGTLADTQ ARYTNMLNGY QFQVSSLEEQ LIQLRADLER 360
  361 QGQEYQMLLD IKTRLEMEIA EYRRLLDGEA TTVSTSSSTT RKVVTIVEEV VDGKVVSSSS 420
  421 KATTETKTT

Type	Start	End	Confidence
Signal Peptide	1	31	0.48
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	429	0.98