YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6682967, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPNFY VPMSNRTGLV RSPFEEPQYY LAEPWQFSLL AAYMLFLILG SFPINALTLY  60
   61 VTVQHKKLRT PLNYILLNLA VADLFMVLGG FTVTLYTALH GYFLLGVTGC NIEGFFATLG 120
  121 GEIALWSLVV LAIERYIVVC KPMSTFRFGE KHAIIGVGFT WVMALTCAVP PLLGWSRYIP 180
  181 EGMQCSCGID YYTPKPEVHN TSFVIYMFIL HFSIPLLIIF FCYSRLLCTV RAAAAQQQES 240
  241 ETTQRAEREV TRMVVVMVIA FLVCWVPYAS VAWYIFANQG AEFGPVFMTV PAFFAKSAAL 300
  301 YNPVIYIMLN RQFRNCMLST VCCGKNPLAE DESSSAVSSK TQSSVVSSAQ VSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.98
Transmembrane Helix	39	63	0.89
Cytoplasmic	64	73	0.93
Transmembrane Helix	74	98	0.86
Non-Cytoplasmic	99	113	0.82
Transmembrane Helix	114	133	0.89
Cytoplasmic	134	152	0.81
Transmembrane Helix	153	174	0.94
Non-Cytoplasmic	175	203	0.96
Transmembrane Helix	204	227	0.85
Cytoplasmic	228	252	0.92
Transmembrane Helix	253	276	0.89
Non-Cytoplasmic	277	286	0.81
Transmembrane Helix	287	309	0.83
Cytoplasmic	310	354	0.97