YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859183, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNQTFQYSK LLVEGLQVTS QSTLPTFILL LMVYAFIMVS NIGMMVLISA DKCLHQPMYV  60
   61 LFCNLTLNDI LGTTDFVPPV LRNLLIEPSE RYITFVECVV QAYFAHLNGT ASHTVIMIMA 120
  121 FDRYVAICNP LRYPAIMTSN MVVKLSVAAW AVAAVLVGIL IGLSVRLSHC RSVIQGSICD 180
  181 NPSLFKLSCE NTVVNNVYGL TFTVVLFTSS VVCVALTYLR IALICFKSKN KATNSKAIKT 240
  241 CSTHLTVYII MLISGSVTIL LHRFPVYAET RKLAAIILYV IPPALNPIIY GVQSKEIRQK 300
  301 ILKLFRNQIN AK

Type	Start	End	Confidence
Cytoplasmic	1	25	0.44
Transmembrane Helix	26	49	0.84
Non-Cytoplasmic	50	103	0.54
Transmembrane Helix	104	125	0.56
Cytoplasmic	126	141	0.88
Transmembrane Helix	142	165	0.86
Non-Cytoplasmic	166	200	0.94
Transmembrane Helix	201	224	0.89
Cytoplasmic	225	243	0.90
Transmembrane Helix	244	264	0.93
Non-Cytoplasmic	265	272	0.85
Transmembrane Helix	273	293	0.90
Cytoplasmic	294	312	0.94