YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859177, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSRSNVETY QNTTIITEFV LRGFPGLPPE YHGSVGALLF ILYLVLATGN IFIIVFVMIE  60
   61 KSIQKPTYII FCNLAMADLA LGTTTYPRVI AKYWMSDKII SFSGCFTQMF FVHFLGATNS 120
  121 FLMALMALDR FIAICNPLRY HTLIKNSTIL IICAFVWTAN MLQLVGVTLL SLSVKYCGSN 180
  181 VIPHCYCDHV SISKLACGDA ATMKVTSTAI AMFVLWGPLS FILFSYVSII ISVSKISKSE 240
  241 GRYKTFSTCT PQLLIICLYY LPRTFVYITN ISGYELSTDT RMVVSMMYSL IPAVINPFIY 300
  301 CFRTKEIKEA IFKRFKKNKV DRKISLG

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.88
Transmembrane Helix	35	58	0.91
Cytoplasmic	59	66	0.89
Transmembrane Helix	67	87	0.91
Non-Cytoplasmic	88	108	0.84
Transmembrane Helix	109	128	0.90
Cytoplasmic	129	146	0.72
Transmembrane Helix	147	166	0.87
Non-Cytoplasmic	167	208	0.93
Transmembrane Helix	209	233	0.85
Cytoplasmic	234	244	0.85
Transmembrane Helix	245	263	0.85
Non-Cytoplasmic	264	282	0.77
Transmembrane Helix	283	304	0.84
Cytoplasmic	305	327	0.96