YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4586516, gi\|5...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.42
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLYRSCLRW LCVLLIGLLG LVEENLANVL DSMLLRNSGK VEERRETGSD APALPQRFLW  60
   61 CYCYHHCPED STNNTCRTDG YCFTMVEEEG GAAVVTSGCL GLVGSEFQCR DTGNSKQRRA 120
  121 LECCTDQDYC NRDLHPTLPP LRTPSYVVGD IHHIALLISV SVCSFILTFI IIFCYFRYKR 180
  181 HELAPRYSLG LHPDESFIPA GESLRDLIEQ SQSSGSGSGL PLLVQRTIAK QIQMVTQIGK 240
  241 GRYGEVWMGR WRGEKVAVKV FFTTEEASWF RETEIYQTVL MRHDNILGFI AADIKGTGSW 300
  301 TQLYLITDYH ENGSLYDYLK CTTLDSRAML KLAYSSVSGL CHLHTEIFGT QGKPAIAHRD 360
  361 LKSKNILVKR NGACCIADLG LAVKFISDTN EVDIPLNTRV GTKRFMAPEV LDETLNRNHF 420
  421 QSYIMADMYS FGLILWEISR RCVTGGIVEE YQLPYHDHVP NDPSYEDMRE VVCIKRIRPS 480
  481 FPNRWSSDEC LRQMGKLMTE CWAHNPASRL TALRVKKTLA KMSESQDIKV

Type	Start	End	Confidence
Signal Peptide	1	27	0.46
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	152	0.93
Transmembrane Helix	153	176	0.87
Cytoplasmic	177	530	0.82