YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6739481, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYFAYFLTF YFQPVQNKAD MSLSQNSSSV YPEYFFIIGL SGIHNSNYYY MFLCITYFVT  60
   61 VTGNSLVLLL IALYRSLHSP KYIGVFNLAL ADFGETNALI PNMMKTFLFD SQYISYNACL 120
  121 ANMFFVHFFS TVQSFTLVVL AYDRFIAIFL PLRYHAIVNY TFMYFVFSII WVFNASIVAF 180
  181 AVSLITRLSF CESNKVNGYY CDYGPVYRLA CNDNSICASM AQLSAALYVV APVIIIVLSY 240
  241 LGIFLALSKI TTWEGRLKAL KTCVSHLLLV GSFFLPIICI FIATSTNSLS LNARVISTSL 300
  301 AHALPPMLHP IIYVLNTAEI KDIIIKIVRN KCLPVRKNIL KLRK

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.43
Transmembrane Helix	49	74	0.86
Cytoplasmic	75	81	0.54
Transmembrane Helix	82	100	0.51
Non-Cytoplasmic	101	122	0.77
Transmembrane Helix	123	142	0.87
Cytoplasmic	143	159	0.72
Transmembrane Helix	160	182	0.87
Non-Cytoplasmic	183	224	0.92
Transmembrane Helix	225	247	0.90
Cytoplasmic	248	262	0.86
Transmembrane Helix	263	284	0.93
Non-Cytoplasmic	285	344	0.58