YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859291, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	141	0.99
Transmembrane Helix	142	166	0.91
Cytoplasmic	167	174	0.93
Transmembrane Helix	175	193	0.90
Non-Cytoplasmic	194	232	0.76
Transmembrane Helix	233	253	0.69
Cytoplasmic	254	259	0.81
Transmembrane Helix	260	281	0.92
Non-Cytoplasmic	282	300	0.92
Transmembrane Helix	301	324	0.88
Cytoplasmic	325	344	0.95
Transmembrane Helix	345	366	0.88
Non-Cytoplasmic	367	385	0.83
Transmembrane Helix	386	406	0.83
Cytoplasmic	407	542	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSVEVSVAL VLCCVLMGAR ALIDSDDVIT RDEQIFLLIG ARSRCERTIR AQSDVVRENN  60
   61 CAPEWDGIIC WPTGKPNQMV AVLCPEYIYD FNHRGYAYRH CDASGNWEQV SIINRTWANY 120
  121 TECTTYLHTN HSDQEEVFER LYLMYTIGYS ISLAALLVAV SILCYFKRLH CTRNYIHIHL 180
  181 FTSFICRAIS IFVKDAVLYA VTNDGELEDG AVEQRPMVGC KAAVTLFLYL LATNHYWILV 240
  241 EGLYLHSLIF MAFLSDKNCL WALTIIGWGI PAVFVSIWVS ARVSLADTQC WDISAGNLKW 300
  301 IYQVPILAAI VVNFFLFLNI IRVLASKLWE TNTGKLDPRQ QYRKLLKSTM VLMPLFGVHY 360
  361 MLFMALPYTD VTGLLWQIQM HYEMLFNSSQ GFFVAFIYCF CNGEVQAEVK KAWLRRSLAL 420
  421 DLKQKARVHS SAGCGSGYYG GMMSHTTTQS VCLSVSGAKG GHSLHTIGAK GQSHLQHSGN 480
  481 LPGYAPQDTE TLFYPVVPKQ KETPCRQSSR NAEESEHDFE PYFVADEEHS GSMSWKELET 540
  541 ML