YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5805257, gi\|1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.52
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	173	0.94
Transmembrane Helix	174	197	0.92
Cytoplasmic	198	205	0.87
Transmembrane Helix	206	224	0.88
Non-Cytoplasmic	225	267	0.89
Transmembrane Helix	268	291	0.69
Cytoplasmic	292	301	0.76
Transmembrane Helix	302	324	0.91
Non-Cytoplasmic	325	343	0.92
Transmembrane Helix	344	368	0.87
Cytoplasmic	369	388	0.95
Transmembrane Helix	389	409	0.87
Non-Cytoplasmic	410	425	0.81
Transmembrane Helix	426	444	0.74
Cytoplasmic	445	575	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTVSLLILC KPSSSPSPVK IIPVDDLPAT AELRASVLRV SLPKTFIKSF LNHLLQAGED  60
   61 GEITAEEQVQ MLLDAKLQCL QKVSSDDPAV GVCVPEWDGL ICWPQGFPGT LTKTPCPGYI 120
  121 YDFNHAAHAY RRCDSNGSSV LAESSNKTWV NYTECIKSPE PNKKRQVFFE RLHIMYTVGY 180
  181 AVSFSSLLVA IFIIGYFRRL HCTRNYIHMH LFVSFMLRAA SIFVKDHVVH TSAGLQESDA 240
  241 VLMNNFTNAV DVAPVDTSQY MGCKVTVLLF IYFLATNYYW ILVEGLYLHS LIFMAFLSDS 300
  301 KYLWGFTLIG WGVPAVFVAA WAVVRATLAD ARCWELSAGN IKWIYQVPIL TAIGLNFILF 360
  361 VNIVRVLATK IRETNAGRYD TRKQYRKLAK STQVLVFVFG VHYIVFVGMP HTFEGLGWEE 420
  421 RMYCELFFNS FQGFFVSIIY CYCNGEVQTE IKKTWTRWNL AFDWKGPVVC GSNRYGSVLT 480
  481 GLNNSTSSQS QLAAGGPGTR STTLFSSRVY RSSGGPTVST HATLPGYVLN SDADSLPPSI 540
  541 PEEPEDSAKQ VDDILLKESL PTRPSSGLED DEETL