YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3098346, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSALFDMPL WQALLNSTLT HNQSNSSLFL LDVPCWQSST MTLTLVLCYC LVLILGLLGN  60
   61 ILLICIIMHQ RDPPNVTSIL IANLSVSDIL VSVFCLPFTV VYTLMDHWIF GALLCRLMPF 120
  121 VQCVSVTVSV LSLVLIALER HQLILHPSGW KPSVPQAYIA VLTVWLLACV TSLPFLAFHL 180
  181 LTSEPYSLFP APLSQLQVCL EVWPSQDHKL AYTTSLLLFQ YCCPLLLMLL CYLRIFLRLQ 240
  241 RRERMLERQC SRNREDEHRR VMHSKRINVM LATLVAAFAV CWLPLNAFNV VADCDQEVLP 300
  301 VCNHNLLFSL CHLLAMSSTC VNPIIYGFLN SNFRKDVASV VLHCHFQPLE DSYEHFPMST 360
  361 MNTDVSRTSF RLRNNSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.81
Transmembrane Helix	43	67	0.90
Cytoplasmic	68	78	0.86
Transmembrane Helix	79	101	0.87
Non-Cytoplasmic	102	116	0.74
Transmembrane Helix	117	138	0.93
Cytoplasmic	139	157	0.92
Transmembrane Helix	158	180	0.94
Non-Cytoplasmic	181	215	0.92
Transmembrane Helix	216	236	0.95
Cytoplasmic	237	266	0.96
Transmembrane Helix	267	288	0.90
Non-Cytoplasmic	289	305	0.92
Transmembrane Helix	306	329	0.84
Cytoplasmic	330	377	0.94