YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18859131, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEANITNISS GTGQKSWVES NVCPPSVSGT TLLIVAYSTV IAVGLVGNTC LVFIISRQKE  60
   61 MRNVTNILIA NLSCSDILMC VVCLPVTVIY TLMDRWILGE TLCKVTPFVQ CMSVTVSIFS 120
  121 LVLIALERHQ LIIHPTGWTP AAGHSYLAVA VTWMVACFIS LPFLSFNILT NAPFQNISLP 180
  181 FNPFSDHVIC MELWPSERNR LAYTTSLLLF QYCLPLLLIL LCYLRIFLRL RRRKDMVEQA 240
  241 TEARQRKARG AQRVNAMLVV IVVAFALCWL PLNVFNTIFD WYHQALPACQ HDVIFSACHL 300
  301 TAMASTCVNP VVYGFLNTNF QKELKATLQR CNCGWGVPET YESFPLSTVA TDVSKVSSMQ 360
  361 HGSLIRSEQC AHC

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.94
Transmembrane Helix	34	55	0.94
Cytoplasmic	56	66	0.91
Transmembrane Helix	67	89	0.90
Non-Cytoplasmic	90	105	0.80
Transmembrane Helix	106	126	0.93
Cytoplasmic	127	144	0.88
Transmembrane Helix	145	166	0.91
Non-Cytoplasmic	167	206	0.90
Transmembrane Helix	207	227	0.92
Cytoplasmic	228	253	0.95
Transmembrane Helix	254	275	0.92
Non-Cytoplasmic	276	292	0.94
Transmembrane Helix	293	316	0.77
Cytoplasmic	317	373	0.87