YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2739141, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSHLNNSS WLLEDPTCPA SLSSTTFLIV AYSTMLAVGL VGNTCLVVVI TRQKEMRNVT  60
   61 NIFIVNLSCS DILVCLVCLP VTIIYTLMDR WILGEALCKV TPFVQCMSVT VSIFSMVLIA 120
  121 LERHQLIIHP TGWKPVVRHS YLAVAVIWII ACFISLPFLS FNILTNSPFH NLSLPFNPFS 180
  181 DHFICIEQWP SEGNRLTYTT TLLLCQYCLP LALILVCYFR IFLRLSRRKD MVERARGGRQ 240
  241 KKAKGSKRVN AMLASIVAAF ALCWLPLNVF NTIFDWNHEA IPVCQHDAIF SACHLTAMAS 300
  301 TCVNPVIYGF LNNNFQKELK SLLSRCRCWG PAESYESFPL STVSTGITKG SILSNGSAST 360
  361 YQPHKKNSLE QKESI

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.91
Transmembrane Helix	29	50	0.93
Cytoplasmic	51	61	0.89
Transmembrane Helix	62	84	0.92
Non-Cytoplasmic	85	100	0.82
Transmembrane Helix	101	121	0.93
Cytoplasmic	122	140	0.91
Transmembrane Helix	141	161	0.95
Non-Cytoplasmic	162	198	0.94
Transmembrane Helix	199	222	0.88
Cytoplasmic	223	248	0.93
Transmembrane Helix	249	268	0.95
Non-Cytoplasmic	269	289	0.87
Transmembrane Helix	290	311	0.80
Cytoplasmic	312	375	0.85