YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33284930, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFQIIMETR CVFCFLFLLT EHIAVMSAQG KDFNQSRLSM GPLSPTQKST IVIGNQINES  60
   61 MPRRPKVLPP MCTDPTEIRD TFKYINTVVS CLVFVVGIIG NSTLLRIIYK NKCMRNGPNI 120
  121 LIASLALGDL LHIMIDIPIN VYKLLAKDWP FGVGLCKLVP FIQKTSVGIT ILSLCALSID 180
  181 RFRAVSSWNR IKGIGVPKWT AIEIILIWVL SIILAVPEAI AFDMITMDYK GEQLRICLLH 240
  241 PKQRIKFMQF YKKAKDWWLF SFYFCMPLTC TAIFYTLMTC EMLRKKNGVQ IALSDHIKQR 300
  301 REVAKTVFCL VLVFALCWLP LHLSRILQRT IYDERDPNRC ELLSFFLVLD YIGINMASVN 360
  361 SCINPIALYM VSKRFKSCFR SCLCCWCLPP EILAMDDKQS CIKLKVTERG SAITAMSPTS 420
  421 ILQIRH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.58
Transmembrane Helix	11	28	0.63
Non-Cytoplasmic	29	84	0.96
Transmembrane Helix	85	105	0.91
Cytoplasmic	106	116	0.78
Transmembrane Helix	117	139	0.82
Non-Cytoplasmic	140	159	0.89
Transmembrane Helix	160	179	0.90
Cytoplasmic	180	198	0.85
Transmembrane Helix	199	221	0.88
Non-Cytoplasmic	222	256	0.98
Transmembrane Helix	257	278	0.91
Cytoplasmic	279	302	0.92
Transmembrane Helix	303	322	0.93
Non-Cytoplasmic	323	350	0.90
Transmembrane Helix	351	371	0.70
Cytoplasmic	372	426	0.75